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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
total RNA-seq
105
ChIP-seq
102
ATAC-seq
47
WGBS
37
single cell RNA-seq
14
DNase-seq
7
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
102
DNA accessibility
Date released
39
May, 2022
16
May, 2021
14
September, 2018
12
February, 2023
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
1
November, 2019
October, 2019
Available data
39
zippedFastqFolder
35
bed narrowPeak
34
bigWig
32
fastq
23
bam
22
bigBed narrowPeak
1
tsv
Organism
102
Homo sapiens
Biosample type
71
primary cell
19
cell line
12
tissue
Organ
149
pancreas
102
epithelium
75
kidney
47
heart
45
blood vessel
45
vasculature
44
artery
27
eye
22
connective tissue
22
liver
12
bone element
12
skeleton
6
limb
5
adipose tissue
3
brain
1
blood
1
bodily fluid
1
musculature of body
1
spleen
Project
53
AMP
49
HPAP
Genome assembly (visualization)
37
hg19
33
GRCh38
Lab
53
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
19
inconsistent ontology term
month_released!
July, 2018
October, 2019
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
102 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
19
tissue
pigmented layer of retina
12
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