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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
137
total RNA-seq
105
ATAC-seq
71
single cell RNA-seq
48
WGBS
14
Hi-C
11
RRBS
9
snATAC-seq
6
MeRIP-seq
5
DNase-seq
2
Capture-C
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
1
pCHi-C
Assay category
105
DNA accessibility
Date released
39
May, 2022
16
May, 2021
14
September, 2018
12
February, 2023
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
January, 2018
2
March, 2020
1
November, 2019
1
October, 2019
Available data
39
zippedFastqFolder
36
bed narrowPeak
36
bigWig
32
fastq
24
bam
22
bigBed narrowPeak
1
tsv
Organism
105
Homo sapiens
Biosample type
72
primary cell
20
cell line
13
tissue
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
56
AMP
49
HPAP
Genome assembly (visualization)
40
hg19
34
GRCh38
Lab
56
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
month_released!
June, 2019
BIOSAMPLE
ASSAY
105 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
cell line
EndoC_BH1
19
GM12878
1
tissue
pigmented layer of retina
12
skeletal muscle tissue
1
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