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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
457
total RNA-seq
125
ChIP-seq
83
DNase-seq
71
ATAC-seq
61
single cell RNA-seq
6
WGBS
6
snATAC-seq
4
RRBS
4
pCHi-C
4
small RNA-seq
3
RNA microarray
3
snDrop-seq
2
STARR-seq
1
FAIRE-seq
1
Hi-C
Assay category
71
DNA accessibility
Date released
64
August, 2021
May, 2023
2
October, 2019
1
August, 2017
1
February, 2023
1
January, 2018
1
November, 2019
1
October, 2017
Available data
68
bed narrowPeak
64
xls
4
bigWig
3
bam
2
bigBed narrowPeak
2
fastq
Organism
71
Homo sapiens
Biosample type
71
tissue
Organ
152
pancreas
103
epithelium
64
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
71
AMP
Genome assembly (visualization)
67
GRCh38
6
hg19
Lab
64
Katalin Susztak, Upenn
7
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2023
BIOSAMPLE
ASSAY
71 results
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ATAC-seq
tissue
kidney
64
adipose tissue
3
adipose tissue(adipose white tissue)
1
islet of Langerhans
1
omental fat pad
1
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