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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
578
ChIP-seq
242
total RNA-seq
97
ATAC-seq
84
DNase-seq
65
single cell RNA-seq
6
RRBS
6
snATAC-seq
5
Hi-C
5
WGBS
5
pCHi-C
4
STARR-seq
4
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
97
DNA accessibility
Date released
64
August, 2021
20
May, 2022
11
May, 2023
October, 2019
1
August, 2017
1
February, 2021
Available data
86
bed narrowPeak
64
xls
21
bigWig
2
bam
1
bed bed3
1
bigBed narrowPeak
1
fastq
Organism
97
Homo sapiens
Biosample type
96
tissue
1
cell line
Organ
149
pancreas
102
epithelium
75
kidney
47
heart
45
blood vessel
45
vasculature
44
artery
27
eye
22
connective tissue
22
liver
12
bone element
12
skeleton
6
limb
5
adipose tissue
3
brain
1
blood
1
bodily fluid
1
musculature of body
1
spleen
0
skin of body
Project
97
AMP
Genome assembly (visualization)
77
GRCh38
22
hg19
Lab
75
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
2
AMP-T2D consortium
Audit category:
1
inconsistent replicate
month_released!
October, 2019
BIOSAMPLE
ASSAY
97 results
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ATAC-seq
tissue
kidney
75
liver
20
right lobe of liver
1
cell line
HepG2
1
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