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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1718ChIP-seq
  • 1053total RNA-seq
  • 506ATAC-seq
  • 365single cell RNA-seq
  • 203DNase-seq
  • 86RNA microarray
  • 85snATAC-seq
  • 69WGBS
  • 52pCHi-C
  • 33Hi-C
  • 20RRBS
  • 15small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 506DNA accessibility
Date released
  • 100May, 2020
  • 93February, 2023
  • 77May, 2022
  • 74August, 2021
  • 34May, 2021
  • 25November, 2019
  • 19October, 2019
  • 17February, 2021
  • 14September, 2018
  • 11May, 2023
  • 7August, 2020
  • 7October, 2017
  • 6July, 2019
  • 5September, 2017
  • 4August, 2017
  • 4March, 2019
  • 4March, 2020
  • 3September, 2020
  • 2January, 2018
Available data
  • 270bed narrowPeak
  • 170bam
  • 127bigWig
  • 64xls
  • 59fastq
  • 39zippedFastqFolder
  • 23bigBed narrowPeak
  • 14tsv
  • 6bed bed3
  • 3bed bedgraph
  • 3txt
  • 2bed broadPeak
Organism
  • 506Homo sapiens
Biosample type
  • 254tissue
  • 198primary cell
  • 29cell line
  • 25in vitro differentiated cells
Organ
  • 152pancreas
  • 103epithelium
  • 75kidney
  • 47heart
  • 46blood vessel
  • 46vasculature
  • 45artery
  • 28eye
  • connective tissue
  • 23liver
  • 12bone element
  • 12skeleton
  • 8limb
  • 6adipose tissue
  • 4brain
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1nerve
  • 1pituitary gland
  • 1skin of body
  • 1spleen
Project
  • 446AMP
  • 49HPAP
  • 11T1D
Genome assembly (visualization)
  • 236hg19
  • 229GRCh38
Lab
  • 320AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 49Klaus Kaestner, Upenn
  • 34Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 3Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 39inconsistent ontology term
  • 1inconsistent replicate
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

506 results

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Clear Filters
ATAC-seq
tissue
kidney75
islet of Langerhans68
coronary artery36
liver20
retina15
primary cell
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
monocyte15
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
in vitro differentiated cells
neural progenitor cell10
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
Progenitor cell of Hypothalamus (neural progenitor cell)1
cardiac precursors (cardiac muscle cell)1
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