Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
541
total RNA-seq
291
ChIP-seq
127
DNase-seq
109
ATAC-seq
68
single cell RNA-seq
9
WGBS
8
pCHi-C
6
Hi-C
6
snATAC-seq
5
RRBS
4
small RNA-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
STARR-seq
1
FAIRE-seq
Assay category
109
DNA accessibility
Date released
66
August, 2021
11
February, 2021
11
May, 2023
10
February, 2023
5
October, 2019
2
October, 2017
1
August, 2017
1
January, 2018
1
November, 2019
1
November, 2020
Available data
81
bed narrowPeak
64
xls
14
bam
12
bigWig
6
bed bed3
4
bed bed3+
4
bed bedgraph
4
bigBed narrowPeak
3
fastq
Organism
109
Homo sapiens
Biosample type
90
tissue
17
in vitro differentiated cells
2
primary cell
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
109
AMP
Genome assembly (visualization)
89
GRCh38
34
hg19
Lab
75
Katalin Susztak, Upenn
32
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
109 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
tissue
kidney
75
adipose tissue
3
adipose tissue(adipose white tissue)
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
in vitro differentiated cells
adipocyte
8
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
osteoblast
2
See all biosamples
Download