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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
total RNA-seq
126
ChIP-seq
91
ATAC-seq
70
single cell RNA-seq
47
WGBS
18
DNase-seq
8
Hi-C
6
MeRIP-seq
5
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
91
DNA accessibility
Date released
39
May, 2022
16
May, 2021
14
September, 2018
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
1
November, 2019
1
October, 2019
Available data
39
zippedFastqFolder
34
bigWig
32
fastq
24
bam
24
bed narrowPeak
22
bigBed narrowPeak
1
tsv
Organism
91
Homo sapiens
Biosample type
72
primary cell
19
cell line
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
artery
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
49
HPAP
42
AMP
Genome assembly (visualization)
34
GRCh38
26
hg19
Lab
49
Klaus Kaestner, Upenn
42
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
organ_slims!
artery
eye
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
91 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
cell line
EndoC_BH1
19
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