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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1690ChIP-seq
  • 1337total RNA-seq
  • 426ATAC-seq
  • 280single cell RNA-seq
  • 185DNase-seq
  • 87RNA microarray
  • 79snATAC-seq
  • 75WGBS
  • 29pCHi-C
  • 25Hi-C
  • 21RRBS
  • 7small RNA-seq
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2FAIRE-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 426DNA accessibility
Date released
  • 77May, 2022
  • 71February, 2023
  • 64August, 2021
  • 55May, 2020
  • 30May, 2021
  • 25November, 2019
  • 21February, 2021
  • 19October, 2019
  • 14September, 2018
  • 11May, 2023
  • 7August, 2020
  • 7October, 2017
  • 6July, 2019
  • 5August, 2017
  • 5September, 2017
  • 3January, 2018
  • 3September, 2020
  • 2March, 2020
  • 1November, 2020
Available data
  • 263bed narrowPeak
  • 117bam
  • 78bigWig
  • 64xls
  • 59fastq
  • 39zippedFastqFolder
  • 24bigBed narrowPeak
  • 7bed bedgraph
  • 6bed bed3
  • 3txt
  • 1bed bed3+
  • 1tsv
Organism
  • 426Homo sapiens
Biosample type
  • 234tissue
  • 142primary cell
  • 29cell line
  • 21in vitro differentiated cells
Organ
  • 134pancreas
  • 103epithelium
  • 75kidney
  • 47heart
  • 46blood vessel
  • 46vasculature
  • 45artery
  • 28eye
  • 23liver
  • 14connective tissue
  • 8bone element
  • 8limb
  • 8skeleton
  • 3adipose tissue
  • 3brain
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1nerve
  • 1pituitary gland
  • 1skin of body
  • 1spleen
Project
  • 377AMP
  • 49HPAP
Genome assembly (visualization)
  • 219GRCh38
  • 181hg19
Lab
  • 260AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 49Klaus Kaestner, Upenn
  • 20Karen Mohlke, UNC
  • 19Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 30inconsistent ontology term
  • 1inconsistent replicate
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

426 results

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Clear Filters
ATAC-seq
tissue
kidney75
islet of Langerhans50
coronary artery36
liver20
retina15
primary cell
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
monocyte13
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
adipocyte4
embryonic stem cell2
Progenitor cell of Hypothalamus (neural progenitor cell)1
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