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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476total RNA-seq
  • 1297ChIP-seq
  • 441ATAC-seq
  • 363single cell RNA-seq
  • 190DNase-seq
  • 87RNA microarray
  • 77snATAC-seq
  • 67WGBS
  • 36pCHi-C
  • 24Hi-C
  • 18small RNA-seq
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 441DNA accessibility
Date released
  • 100February, 2023
  • 77May, 2022
  • 76August, 2021
  • 45May, 2020
  • 34May, 2021
  • 20October, 2019
  • 17February, 2021
  • 14September, 2018
  • 11May, 2023
  • 8October, 2017
  • 7August, 2020
  • 6July, 2019
  • 5August, 2017
  • 5September, 2017
  • 4March, 2019
  • 3January, 2018
  • 3November, 2019
  • 3September, 2020
  • 2March, 2020
  • 1November, 2020
Available data
  • 250bed narrowPeak
  • 149bam
  • 131bigWig
  • 64xls
  • 61fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 13tsv
  • 11bed bed3
  • 4bed bed3+
  • 2bed broadPeak
Organism
  • 441Homo sapiens
Biosample type
  • 241tissue
  • 145primary cell
  • 29in vitro differentiated cells
  • 26cell line
Organ
  • 131pancreas
  • 101epithelium
  • 75kidney
  • 47heart
  • 46blood vessel
  • 46vasculature
  • 45artery
  • 28eye
  • 22liver
  • 21connective tissue
  • 12bone element
  • 12skeleton
  • 8limb
  • 6adipose tissue
  • 4brain
  • 1blood
  • 1bodily fluid
  • 1musculature of body
  • 1nerve
  • 1pituitary gland
  • 1skin of body
  • 1spleen
Project
  • 381AMP
  • 49HPAP
  • 11T1D
Genome assembly (visualization)
  • 226hg19
  • 208GRCh38
Lab
  • 256AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 49Klaus Kaestner, Upenn
  • 34Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 33inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

441 results

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Clear Filters
ATAC-seq
tissue
kidney75
islet of Langerhans49
coronary artery36
liver20
retina15
primary cell
pancreatic alpha cell35
pancreatic beta cell23
monocyte15
pancreatic acinar cell9
pancreatic ductal cell4
in vitro differentiated cells
neural progenitor cell10
chondrocyte5
embryonic stem cell5
adipocyte4
immature adipocyte2
cell line
EndoC_BH117
smooth muscle cell of the coronary artery8
GM128781
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