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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 755ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 195DNA accessibility
Date released
  • 100May, 2020
  • 35February, 2023
  • 24November, 2019
  • 12August, 2021
  • 6February, 2021
  • 5October, 2019
  • 4March, 2019
  • 4March, 2020
  • 4May, 2021
  • 1October, 2017
Available data
  • 84bam
  • 63bigWig
  • 43bed narrowPeak
  • 14tsv
  • 7bed bed3
  • 7bed bedgraph
  • 3bed bed3+
  • 3bigBed narrowPeak
  • 3txt
  • 2bed broadPeak
  • 2fastq
Organism
  • 195Homo sapiens
Biosample type
  • 113primary cell
  • 45tissue
  • 34in vitro differentiated cells
  • 3cell line
Organ
  • 39pancreas
  • 15connective tissue
  • 4bone element
  • 4skeleton
  • 3adipose tissue
  • 2epithelium
  • 1brain
  • 1liver
Project
  • 184AMP
  • 11T1D
Genome assembly (visualization)
  • 115hg19
  • 41GRCh38
Lab
  • 170AMP-T2D consortium
  • 15Kyle Gaulton, UCSD
  • 5Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 21inconsistent ontology term
  • 1inconsistent replicate
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

195 results

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Clear Filters
ATAC-seq
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
macrophage11
gabaergic neuron3
glutamatergic neuron3
tissue
islet of Langerhans37
adipose tissue2
acetabular part of hip bone1
adipose tissue(adipose white tissue)1
brain1
in vitro differentiated cells
neural progenitor cell10
adipocyte8
embryonic stem cell5
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH12
HepG21
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