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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 181ChIP-seq
  • 105ATAC-seq
  • 89single cell RNA-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 105DNA accessibility
Date released
  • 45May, 2020
  • 32February, 2023
  • 12August, 2021
  • 4March, 2019
  • 4May, 2021
  • 3October, 2019
  • 2March, 2020
  • 1February, 2021
  • 1November, 2019
  • 1October, 2017
Available data
  • 58bam
  • 58bigWig
  • 15bed narrowPeak
  • 13tsv
  • 6bed bed3
  • 3bed bed3+
  • 3bigBed narrowPeak
  • 2bed broadPeak
  • 2fastq
Organism
  • 105Homo sapiens
Biosample type
  • 58primary cell
  • 26tissue
  • 21in vitro differentiated cells
Organ
  • 18pancreas
  • 11connective tissue
  • 4bone element
  • 4skeleton
  • 3adipose tissue
  • 1brain
Project
  • 94AMP
  • 11T1D
Genome assembly (visualization)
  • 80hg19
  • 15GRCh38
Lab
  • 83AMP-T2D consortium
  • 15Kyle Gaulton, UCSD
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 12inconsistent ontology term
BIOSAMPLE
ASSAY

105 results

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Clear Filters
ATAC-seq
primary cell
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
oligodendrocyte3
B cell2
tissue
islet of Langerhans18
adipose tissue2
acetabular part of hip bone1
adipose tissue(adipose white tissue)1
brain1
in vitro differentiated cells
neural progenitor cell10
adipocyte4
embryonic stem cell4
immature adipocyte1
osteoblast1
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