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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 574ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 22DNase-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 90DNA accessibility
Date released
  • 55May, 2020
  • 23November, 2019
  • 5February, 2021
  • 3February, 2023
  • 2March, 2020
  • 2October, 2019
Available data
  • 28bed narrowPeak
  • 26bam
  • 7bed bedgraph
  • 5bigWig
  • 3txt
  • 1bed bed3
  • 1tsv
Organism
  • 90Homo sapiens
Biosample type
  • 55primary cell
  • 19tissue
  • 13in vitro differentiated cells
  • 3cell line
Organ
  • 21pancreas
  • 4connective tissue
  • 2epithelium
  • 1liver
Project
  • 90AMP
Genome assembly (visualization)
  • 35hg19
  • 26GRCh38
Lab
  • 87AMP-T2D consortium
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 9inconsistent ontology term
  • 1inconsistent replicate
BIOSAMPLE
ASSAY

90 results

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Clear Filters
ATAC-seq
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
macrophage11
tissue
islet of Langerhans19
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
adipocyte4
Progenitor cell of Hypothalamus (neural progenitor cell)1
cardiac precursors (cardiac muscle cell)1
cardiomyocytes (cardiac muscle cell)1
cell line
EndoC_BH12
HepG21
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