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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
217
ATAC-seq
174
single cell RNA-seq
136
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
0
CRISPR RNA-seq
Assay category
292
DNA binding
136
Transcription
Target of assay
185
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
93
August, 2017
64
October, 2019
50
August, 2021
29
October, 2018
26
May, 2022
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
15
April, 2019
13
February, 2023
12
December, 2017
9
October, 2017
6
September, 2017
4
December, 2018
4
July, 2018
3
November, 2018
2
March, 2020
1
January, 2019
1
May, 2021
1
May, 2023
Available data
1623
bam
bigWig
925
tsv
595
bed narrowPeak
377
bigBed narrowPeak
317
fastq
238
tagAlign
59
txt
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
427
Homo sapiens
Biosample type
428
tissue
127
primary cell
92
in vitro differentiated cells
82
cell line
2
stem cell
Organ
87
liver
58
brain
58
connective tissue
57
adipose tissue
56
kidney
55
pancreas
21
eye
21
limb
19
blood vessel
19
heart
19
vasculature
12
musculature of body
12
nerve
9
artery
8
spleen
4
bone element
4
gonad
4
ovary
4
skeleton
2
epithelium
1
lymph node
1
spinal cord
Project
421
AMP
7
T1D
Genome assembly (visualization)
7
GRCh38
6
hg19
Lab
346
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
428 results
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Clear Filters
ChIP-seq
total RNA-seq
tissue
liver
63
20
islet of Langerhans
42
32
kidney
7
49
subcutaneous abdominal adipose tissue
35
tibial nerve
11
1
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