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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
88
DNA binding
1
Transcription
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
85
May, 2021
3
March, 2020
1
March, 2023
Available data
88
bam
88
bed narrowPeak
88
bigWig
84
tagAlign
Organism
88
Homo sapiens
Biosample type
84
primary cell
2
cell line
2
tissue
1
stem cell
Organ
4
pancreas
2
epithelium
Project
AMP
88
T1D
1
community
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
84
Kyle Gaulton, UCSD
4
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
2
inconsistent ontology term
assembly!
hg18
award.project!
AMP
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
CRISPR RNA-seq
primary cell
monocyte
84
cell line
EndoC_BH1
2
tissue
islet of Langerhans
2
stem cell
SB Ad3.1
1
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