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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
132
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
0
CRISPR RNA-seq
Assay category
179
DNA binding
Target of assay
104
histone
104
histone modification
52
broad histone mark
51
narrow histone mark
43
transcription factor
32
control
11
RNA binding protein
3
chromatin remodeller
Date released
60
August, 2017
43
May, 2021
31
December, 2017
24
February, 2018
21
August, 2021
Available data
146
bam
120
fastq
115
bigWig
110
bed narrowPeak
40
tagAlign
bed bed3+
14
bigBed narrowPeak
Organism
179
Homo sapiens
Biosample type
879
tissue
484
cell line
276
primary cell
179
in vitro differentiated cells
1
stem cell
Organ
60
connective tissue
22
epithelium
19
embryo
15
liver
3
pancreas
Project
179
AMP
Genome assembly (visualization)
101
GRCh38
100
hg19
Lab
142
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
bed bed3+
month_released!
February, 2023
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
in vitro differentiated cells
adipocyte
60
embryonic stem cell
40
neural progenitor cell
21
hepatocyte
15
pancreatic endoderm
15
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