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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
778
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
0
CRISPR RNA-seq
Assay category
778
DNA binding
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
127
August, 2017
111
May, 2019
76
November, 2017
74
April, 2019
59
October, 2018
50
May, 2020
35
May, 2024
17
December, 2017
12
October, 2017
7
January, 2019
6
September, 2017
4
December, 2018
3
November, 2018
2
March, 2020
Available data
633
bam
522
bigWig
520
bed narrowPeak
312
bigBed narrowPeak
238
tagAlign
141
fastq
bed broadPeak
15
bed bed3+
1
tagAlign bed3+
Organism
777
Homo sapiens
Biosample type
778
tissue
253
primary cell
149
in vitro differentiated cells
109
cell line
4
stem cell
Organ
200
brain
116
liver
111
heart
88
pancreas
70
blood vessel
70
vasculature
66
limb
56
connective tissue
55
adipose tissue
35
nerve
27
artery
26
kidney
16
musculature of body
14
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
776
AMP
2
T1D
Genome assembly (visualization)
483
GRCh38
406
hg19
Lab
743
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
778 results
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Clear Filters
ChIP-seq
tissue
liver
108
islet of Langerhans
58
left cardiac atrium
35
subcutaneous abdominal adipose tissue
35
tibial nerve
35
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