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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
93
single cell RNA-seq
72
total RNA-seq
47
ATAC-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
0
CRISPR RNA-seq
Assay category
117
DNA binding
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
transcription factor
11
RNA binding protein
Date released
52
April, 2019
35
May, 2024
19
May, 2019
5
October, 2019
4
June, 2019
2
February, 2021
Available data
97
bed narrowPeak
97
bigWig
81
bam
56
bigBed narrowPeak
2
tagAlign
Organism
117
Homo sapiens
Biosample type
111
tissue
4
primary cell
2
cell line
Organ
203
brain
200
liver
187
pancreas
117
heart
116
epithelium
112
connective tissue
89
vasculature
88
blood vessel
66
limb
55
adipose tissue
42
kidney
35
nerve
29
artery
26
musculature of body
19
embryo
15
vein
14
spleen
9
blood
9
bodily fluid
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
117
AMP
Genome assembly (visualization)
96
GRCh38
62
hg19
Lab
82
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
3
inconsistent ontology term
files.file_type!
bed broadPeak
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
117 results
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Clear Filters
ChIP-seq
tissue
left cardiac atrium
35
heart left ventricle
30
heart
14
heart right ventricle
13
right atrium auricular region
9
+ See 2 more…
primary cell
cardiac fibroblast
4
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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