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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
539
ChIP-seq
277
ATAC-seq
263
single cell RNA-seq
234
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
21
RRBS
21
pCHi-C
18
Hi-C
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
1
Transcription
Date released
3
August, 2017
October, 2019
1
March, 2023
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed broadPeak
1
bigBed broadPeak
1
fastq
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
stem cell
1
tissue
Organ
1
liver
Project
3
AMP
1
community
Genome assembly (visualization)
GRCh38
178
hg19
Lab
3
AMP-T2D consortium
1
Anna Gloyn, Oxford
assembly!
GRCh38
month_released!
March, 2020
October, 2019
BIOSAMPLE
ASSAY
4 results
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DNase-seq
CRISPR RNA-seq
primary cell
skeletal muscle myoblast
2
stem cell
SB Ad3.1
1
tissue
right lobe of liver
1
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