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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
495
total RNA-seq
264
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1
DNA accessibility
1
Transcription
Date released
1
March, 2023
1
October, 2019
Available data
1
bam
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
1
tar
Organism
1
Homo sapiens
Biosample type
tissue
1
primary cell
1
stem cell
Organ
1
blood vessel
1
epithelium
1
vasculature
1
vein
Project
1
AMP
1
community
Genome assembly (visualization)
1
hg19
Lab
1
AMP-T2D consortium
1
Anna Gloyn, Oxford
biosample_type!
tissue
files.file_type!
bed bed3
organ_slims!
pericardium
BIOSAMPLE
ASSAY
2 results
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CRISPR RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
1
stem cell
SB Ad3.1
1
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