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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1837
ChIP-seq
1409
total RNA-seq
474
ATAC-seq
367
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
1
Transcription
Date released
15
July, 2019
6
August, 2017
1
March, 2023
Available data
19
bed bedMethyl
19
bigBed bedMethyl
4
fastq
Organism
21
Homo sapiens
Biosample type
11
tissue
10
primary cell
1
stem cell
Organ
6
epithelium
5
musculature of body
4
kidney
2
brain
2
heart
2
liver
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
21
AMP
1
community
Genome assembly (visualization)
19
hg19
Lab
21
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
2
inconsistent ontology term
assay_title!
snDrop-seq
organ_slims!
artery
bone element
BIOSAMPLE
ASSAY
22 results
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RRBS
CRISPR RNA-seq
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
stem cell
SB Ad3.1
1
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