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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1863
ChIP-seq
982
total RNA-seq
509
ATAC-seq
351
single cell RNA-seq
212
DNase-seq
69
WGBS
57
snATAC-seq
55
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
snDrop-seq
Assay category
57
DNA accessibility
1
Transcription
Date released
February, 2021
22
May, 2022
16
January, 2021
11
August, 2021
10
April, 2020
2
February, 2023
1
August, 2022
1
March, 2023
Available data
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
61
Homo sapiens
Biosample type
29
primary cell
28
tissue
5
cell line
1
stem cell
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
8
kidney
2
liver
1
musculature of body
Project
21
HPAP
18
T1D
13
AMP
10
LungMap
1
community
Genome assembly (visualization)
1
hg19
Lab
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
5
Bing Ren, UCSD
2
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
2
audit script error
1
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
63 results
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snATAC-seq
STARR-seq
CRISPR RNA-seq
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
cell line
HEK293T
2
HepG2
2
Synthesized DNA
1
stem cell
SB Ad3.1
1
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