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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1558
ChIP-seq
1432
total RNA-seq
525
ATAC-seq
368
single cell RNA-seq
174
DNase-seq
87
RNA microarray
83
snATAC-seq
65
WGBS
56
pCHi-C
28
Hi-C
16
small RNA-seq
14
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
65
DNA methylation
1
Transcription
Date released
41
May, 2022
11
July, 2019
August, 2017
7
November, 2018
6
February, 2021
1
March, 2023
Available data
41
zippedFastqFolder
15
bam
14
bed bedMethyl
14
bigBed bedMethyl
14
bigWig
13
fastq
6
tsv
Organism
65
Homo sapiens
Biosample type
47
primary cell
17
tissue
1
cell line
1
stem cell
Organ
51
pancreas
47
epithelium
8
heart
2
blood vessel
2
liver
2
spleen
2
vasculature
1
limb
musculature of body
Project
47
HPAP
18
AMP
1
community
Genome assembly (visualization)
14
GRCh38
Lab
47
Klaus Kaestner, Upenn
18
AMP-T2D consortium
1
Anna Gloyn, Oxford
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
August, 2017
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
66 results
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WGBS
CRISPR RNA-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
aorta
2
body of pancreas
2
heart right ventricle
2
pancreas
2
+ See 4 more…
cell line
HepG2
1
stem cell
SB Ad3.1
1
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