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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1592
ChIP-seq
1280
total RNA-seq
ATAC-seq
181
DNase-seq
173
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
24
Hi-C
18
snATAC-seq
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
174
Transcription
Date released
106
August, 2021
47
September, 2023
April, 2020
6
April, 2018
6
February, 2021
3
December, 2019
3
May, 2023
1
February, 2023
1
March, 2023
1
May, 2022
Available data
111
tsv
13
txt
6
bam
6
bigWig
6
csv
6
fastq
Organism
173
Homo sapiens
Biosample type
primary cell
171
tissue
2
in vitro differentiated cells
1
stem cell
Organ
93
heart
64
kidney
6
blood vessel
6
pancreas
6
vasculature
2
artery
1
liver
1
musculature of body
Project
126
AMP
47
KPMP
1
community
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
115
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
1
Anna Gloyn, Oxford
Audit category:
7
audit script error
2
inconsistent ontology term
assay_title!
ATAC-seq
biosample_type!
primary cell
month_released!
April, 2020
BIOSAMPLE
ASSAY
174 results
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single cell RNA-seq
CRISPR RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
stem cell
SB Ad3.1
1
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