Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1494
total RNA-seq
524
ATAC-seq
326
single cell RNA-seq
180
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
31
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
84
February, 2021
5
August, 2021
3
February, 2023
2
December, 2019
Available data
84
txt
2
bed bed3+
2
tsv
Organism
93
Homo sapiens
Biosample type
87
tissue
5
cell line
2
in vitro differentiated cells
Organ
84
bone element
3
connective tissue
3
epithelium
2
kidney
2
pancreas
1
adipose tissue
Project
91
AMP
3
T1D
Genome assembly (visualization)
2
hg19
Lab
89
AMP-T2D consortium
3
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
86
inconsistent ontology term
2
audit script error
month_released!
September, 2020
organ_slims!
brain
BIOSAMPLE
ASSAY
94 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
Capture-C
CRISPR genome editing followed by DNA sequencing
tissue
bone element
84
kidney interstitium
1
renal glomerulus
1
subcutaneous adipose tissue
1
cell line
EndoC_BH1
2
3
in vitro differentiated cells
adipocyte
1
osteoblast
1
Download