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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
61
total RNA-seq
46
ATAC-seq
11
DNase-seq
6
single cell RNA-seq
5
Hi-C
2
WGBS
1
FAIRE-seq
1
RRBS
pCHi-C
0
CRISPR genome editing followed by DNA sequencing
0
MeRIP-seq
Assay category
11
DNA accessibility
2
DNA methylation
Date released
7
June, 2019
4
October, 2019
2
July, 2019
Available data
13
bam
12
bigWig
11
bed bed3+
11
bed broadPeak
11
bed narrowPeak
11
bigBed broadPeak
11
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
13
Homo sapiens
Biosample type
7
tissue
6
primary cell
Organ
81
kidney
72
epithelium
69
pancreas
38
heart
37
limb
34
musculature of body
32
brain
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
11
liver
8
adipose tissue
4
artery
4
eye
3
spleen
2
nerve
2
vein
Project
13
AMP
Genome assembly (visualization)
12
GRCh38
10
hg19
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
13 results
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DNase-seq
WGBS
tissue
aorta
2
coronary artery
2
tibial artery
2
ascending aorta
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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