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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
546
ChIP-seq
239
ATAC-seq
212
total RNA-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
69
WGBS
34
Hi-C
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
87
DNA accessibility
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
5
February, 2023
2
October, 2019
1
August, 2017
1
August, 2022
Available data
209
bam
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
205
bed bed3+
39
fastq
21
zippedFastqFolder
1
txt
Organism
89
Homo sapiens
Biosample type
58
primary cell
29
tissue
3
cell line
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
8
kidney
2
epithelium
1
liver
1
musculature of body
Project
48
HPAP
21
T1D
11
AMP
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
21
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
5
AMP-T2D consortium
Audit category:
29
audit script error
files.file_type!
bed narrowPeak
tsv
BIOSAMPLE
ASSAY
90 results
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snATAC-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
right lobe of liver
1
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cell line
EndoC_BH1
3
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