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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
656
ChIP-seq
233
total RNA-seq
138
ATAC-seq
117
single cell RNA-seq
56
snATAC-seq
23
pCHi-C
14
DNase-seq
6
Hi-C
5
STARR-seq
4
RRBS
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
DNAme array
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
14
DNA accessibility
Date released
10
June, 2019
3
February, 2023
2
August, 2017
1
November, 2020
1
October, 2019
Available data
14
bam
14
bed narrowPeak
14
bigBed narrowPeak
14
bigWig
13
bed broadPeak
13
bigBed broadPeak
12
bed bed3+
1
fastq
Organism
17
Homo sapiens
Biosample type
178
tissue
13
primary cell
4
cell line
1
in vitro differentiated cells
Organ
epithelium
13
kidney
6
connective tissue
6
vasculature
5
brain
4
blood vessel
3
heart
2
liver
2
vein
1
eye
1
musculature of body
1
pancreas
Project
14
AMP
3
T1D
Genome assembly (visualization)
13
hg19
12
GRCh38
Lab
14
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
17 results
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DNase-seq
CRISPR genome editing followed by DNA sequencing
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
cell line
EndoC_BH1
3
Panc1
1
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