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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1510
total RNA-seq
527
ATAC-seq
358
single cell RNA-seq
180
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
31
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
5
August, 2021
5
January, 2018
3
February, 2023
Available data
5
bigWig
5
fastq
Organism
13
Homo sapiens
Biosample type
8
cell line
4
in vitro differentiated cells
1
stem cell
Organ
2
kidney
2
liver
1
embryo
Project
10
AMP
3
T1D
Genome assembly (visualization)
5
hg18
Lab
5
AMP-T2D consortium
5
Bing Ren, UCSD
3
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
csv
organ_slims!
brain
BIOSAMPLE
ASSAY
13 results
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GRO-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
cell line
EndoC_BH1
3
HEK293T
2
HepG2
2
Synthesized DNA
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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