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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1646
ChIP-seq
1429
total RNA-seq
462
ATAC-seq
270
single cell RNA-seq
173
DNase-seq
87
RNA microarray
84
snATAC-seq
65
WGBS
53
pCHi-C
26
Hi-C
18
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
3
February, 2023
Organism
13
Homo sapiens
Biosample type
9
cell line
4
tissue
Organ
10
pancreas
6
epithelium
Project
10
AMP
3
T1D
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
organ_slims!
heart
vasculature
BIOSAMPLE
ASSAY
13 results
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MeRIP-seq
CRISPR genome editing followed by DNA sequencing
cell line
EndoC_BH1
6
3
tissue
islet of Langerhans
4