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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
Date released
111
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
7
August, 2021
5
February, 2023
2
December, 2019
1
August, 2022
Available data
85
txt
27
fastq
21
zippedFastqFolder
2
tsv
1
bed bed3+
Organism
172
Homo sapiens
Biosample type
115
tissue
56
primary cell
3
cell line
Organ
84
bone element
11
pancreas
10
lung
8
blood
8
bodily fluid
8
kidney
1
adipose tissue
1
connective tissue
1
epithelium
1
musculature of body
Project
95
AMP
48
HPAP
21
T1D
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
89
AMP-T2D consortium
48
Klaus Kaestner, Upenn
21
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
84
inconsistent ontology term
31
audit script error
assay_title!
ChIP-seq
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
174 results
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Clear Filters
RNA microarray
snATAC-seq
CRISPR genome editing followed by DNA sequencing
tissue
bone element
84
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
+ See 4 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
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