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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1757
ChIP-seq
1527
total RNA-seq
ATAC-seq
369
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1
DNA sequencing
Date released
84
February, 2021
3
February, 2023
2
August, 2021
2
December, 2019
Available data
84
txt
2
tsv
1
vcf
Organism
90
Homo sapiens
Biosample type
87
tissue
4
cell line
Organ
84
bone element
2
kidney
1
adipose tissue
1
connective tissue
1
epithelium
1
liver
Project
88
AMP
3
T1D
Lab
87
AMP-T2D consortium
3
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
84
inconsistent ontology term
2
audit script error
assay_title!
ATAC-seq
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
91 results
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RNA microarray
CRISPR genome editing followed by DNA sequencing
whole genome sequencing assay
tissue
bone element
84
kidney interstitium
1
renal glomerulus
1
subcutaneous adipose tissue
1
cell line
EndoC_BH1
3
HepG2
1
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