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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1
DNA sequencing
Date released
5
August, 2021
1
February, 2023
Available data
2
bed bed3+
1
vcf
Organism
5
Homo sapiens
Biosample type
4
cell line
2
in vitro differentiated cells
Organ
3
epithelium
3
pancreas
2
connective tissue
1
liver
Project
6
AMP
Genome assembly (visualization)
2
hg19
Lab
3
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
6 results
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Capture-C
CRISPR genome editing followed by sgRNA sequencing
whole genome sequencing assay
cell line
EndoC_BH1
2
1
HepG2
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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