Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
125
total RNA-seq
87
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
125
DNA binding
Target of assay
91
histone
91
histone modification
47
narrow histone mark
44
broad histone mark
26
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
26
August, 2017
24
October, 2019
21
September, 2018
19
December, 2017
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
May, 2021
1
February, 2023
1
March, 2020
Available data
125
bam
98
bigWig
94
bed narrowPeak
72
fastq
36
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
4
tagAlign
3
bed bed3+
Organism
125
Homo sapiens
Biosample type
92
primary cell
19
in vitro differentiated cells
15
cell line
Organ
552
liver
218
brain
215
pancreas
153
connective tissue
134
heart
126
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
125
AMP
1
T1D
Genome assembly (visualization)
98
hg19
94
GRCh38
Lab
126
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
assay_title!
GRO-seq
month_released!
May, 2021
BIOSAMPLE
ASSAY
126 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 6 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
cell line
EndoC_BH1
14
1
See all biosamples
Download