Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
0
CRISPR genome editing followed by sgRNA sequencing
0
GRO-seq
Assay category
907
DNA binding
11
DNA methylation
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
181
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
July, 2019
6
September, 2017
2
March, 2020
Available data
722
bam
615
bigWig
595
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
223
fastq
35
bed broadPeak
28
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
1
tagAlign bed3+
Organism
911
Homo sapiens
Biosample type
918
tissue
485
cell line
289
primary cell
202
in vitro differentiated cells
4
stem cell
Organ
210
brain
156
liver
124
heart
119
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
33
musculature of body
28
artery
28
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pericardium
1
pituitary gland
Project
916
AMP
2
T1D
Genome assembly (visualization)
590
GRCh38
538
hg19
Lab
878
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
918 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
RRBS
tissue
liver
145
1
islet of Langerhans
71
1
left cardiac atrium
40
heart left ventricle
35
1
subcutaneous abdominal adipose tissue
36
+ See 104 more…
See all biosamples
Download