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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1147
ChIP-seq
864
total RNA-seq
483
ATAC-seq
364
single cell RNA-seq
86
RNA microarray
84
snATAC-seq
64
WGBS
49
pCHi-C
29
Hi-C
18
DNase-seq
18
RRBS
12
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
18
DNA accessibility
Date released
June, 2019
10
October, 2019
5
November, 2018
3
August, 2017
1
February, 2023
Available data
16
bam
16
bed narrowPeak
16
bigBed narrowPeak
16
bigWig
13
bed broadPeak
13
bigBed broadPeak
12
bed bed3+
7
fastq
Organism
18
Homo sapiens
Biosample type
10
tissue
6
primary cell
3
cell line
Organ
6
epithelium
5
pancreas
4
blood vessel
4
limb
liver
4
vasculature
connective tissue
3
kidney
2
artery
2
brain
2
nerve
2
vein
1
adipose tissue
1
spleen
Project
19
AMP
Genome assembly (visualization)
16
hg19
14
GRCh38
Lab
19
AMP-T2D consortium
month_released!
June, 2019
organ_slims!
connective tissue
liver
BIOSAMPLE
ASSAY
19 results
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DNase-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
body of pancreas
2
brain
2
tibial artery
2
tibial nerve
2
islet of Langerhans
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
EndoC_BH1
1
Panc1
1
glomerular visceral epithelial cell
1
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