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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1555
ChIP-seq
1164
total RNA-seq
244
ATAC-seq
118
single cell RNA-seq
112
DNase-seq
38
pCHi-C
28
WGBS
23
Hi-C
22
snATAC-seq
15
small RNA-seq
10
MeRIP-seq
10
RRBS
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
1
August, 2017
1
February, 2023
1
July, 2019
1
November, 2018
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
fastq
Organism
3
Homo sapiens
Biosample type
3
tissue
1
cell line
primary cell
Organ
3
pancreas
1
brain
1
epithelium
kidney
Project
4
AMP
Genome assembly (visualization)
3
hg19
Lab
4
AMP-T2D consortium
biosample_type!
primary cell
organ_slims!
bone element
kidney
BIOSAMPLE
ASSAY
4 results
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FAIRE-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
frontal cortex
1
islet of Langerhans
1
pancreas
1
cell line
EndoC_BH1
1
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