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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
470
ATAC-seq
235
single cell RNA-seq
227
ChIP-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
55
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
2
July, 2019
1
February, 2023
1
October, 2019
Available data
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
fastq
1
tar
Organism
3
Homo sapiens
Biosample type
2
tissue
1
cell line
1
primary cell
Organ
2
epithelium
1
blood vessel
1
brain
1
kidney
1
pancreas
1
vasculature
1
vein
Project
4
AMP
Genome assembly (visualization)
3
hg19
Lab
4
AMP-T2D consortium
files.file_type!
fastq
organ_slims!
gonad
target.investigated_as!
histone
BIOSAMPLE
ASSAY
4 results
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FAIRE-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
frontal cortex
1
kidney
1
cell line
EndoC_BH1
1
primary cell
endothelial cell of umbilical vein
1
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