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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1853
ChIP-seq
1491
total RNA-seq
453
ATAC-seq
335
single cell RNA-seq
212
DNase-seq
87
RNA microarray
62
snATAC-seq
57
pCHi-C
34
WGBS
31
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
5
MeRIP-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Date released
5
January, 2018
1
February, 2023
Available data
5
bigWig
5
fastq
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
cell line
1
stem cell
Organ
1
embryo
1
epithelium
1
pancreas
Project
6
AMP
Genome assembly (visualization)
5
hg18
Lab
6
AMP-T2D consortium
lab.title!
Bing Ren, UCSD
month_released!
May, 2022
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
6 results
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GRO-seq
CRISPR genome editing followed by sgRNA sequencing
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
cell line
EndoC_BH1
1
stem cell
hESC
1
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