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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
total RNA-seq
414
ATAC-seq
356
single cell RNA-seq
211
DNase-seq
87
RNA microarray
78
snATAC-seq
75
WGBS
52
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
29
3D chromatin structure
Date released
8
July, 2019
8
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
December, 2018
1
February, 2023
1
March, 2019
1
March, 2023
Available data
18
hic
16
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
Organism
29
Homo sapiens
Biosample type
15
tissue
10
primary cell
5
cell line
in vitro differentiated cells
Organ
10
pancreas
9
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
Project
26
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
22
hg19
2
GRCh38
Lab
23
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
total RNA-seq
biosample_type!
in vitro differentiated cells
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
30 results
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Hi-C
CRISPR genome editing followed by sgRNA sequencing
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 4 more…
cell line
EndoC_BH1
1
1
HepG2
2
Panc1
1
See all biosamples
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