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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1836
ChIP-seq
1522
total RNA-seq
530
ATAC-seq
369
single cell RNA-seq
210
DNase-seq
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
1
February, 2023
Organism
10
Homo sapiens
Biosample type
7
cell line
4
tissue
Organ
11
pancreas
7
epithelium
Project
11
AMP
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
1
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
RNA microarray
whole genome sequencing assay
organ_slims!
nerve
BIOSAMPLE
ASSAY
11 results
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MeRIP-seq
CRISPR genome editing followed by sgRNA sequencing
cell line
EndoC_BH1
6
1
tissue
islet of Langerhans
4