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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1522
total RNA-seq
531
ATAC-seq
366
single cell RNA-seq
212
DNase-seq
85
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
367
Transcription
21
DNA methylation
Target of assay
3
control
Date released
106
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
18
July, 2019
9
April, 2020
6
August, 2017
3
August, 2018
December, 2019
3
June, 2018
3
May, 2023
2
February, 2023
1
March, 2023
1
November, 2018
1
September, 2018
Available data
209
tsv
138
fastq
106
bam
106
bigWig
52
zippedFastqFolder
19
bed bedMethyl
19
bigBed bedMethyl
13
txt
8
csv
Organism
387
Homo sapiens
Biosample type
197
primary cell
190
tissue
2
cell line
Organ
95
heart
83
pancreas
77
epithelium
67
kidney
9
lung
7
vasculature
6
blood vessel
6
musculature of body
5
brain
5
connective tissue
3
liver
2
artery
1
eye
1
pericardium
Project
247
AMP
85
HPAP
47
KPMP
9
LungMap
1
community
Genome assembly (visualization)
125
hg19
106
GRCh38
Lab
236
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
1
Anna Gloyn, Oxford
Audit category:
9
inconsistent ontology term
5
audit script error
month_released!
December, 2019
BIOSAMPLE
ASSAY
389 results
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single cell RNA-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
shRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 24 more…
tissue
kidney
63
1
heart left ventricle
18
1
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 17 more…
cell line
EndoC-BH1
1
EndoC_BH1
1
See all biosamples
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