Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1338
total RNA-seq
1316
ChIP-seq
508
ATAC-seq
368
single cell RNA-seq
206
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
54
pCHi-C
29
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
19
DNA methylation
Date released
14
July, 2019
5
August, 2017
1
February, 2023
Available data
17
bed bedMethyl
17
bigBed bedMethyl
3
fastq
Organism
19
Homo sapiens
Biosample type
10
tissue
9
primary cell
1
cell line
Organ
7
epithelium
5
musculature of body
4
kidney
3
pancreas
2
brain
2
heart
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
20
AMP
Genome assembly (visualization)
17
hg19
Lab
20
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
audit.WARNING.category!
inconsistent assembly
organ_slims!
liver
BIOSAMPLE
ASSAY
20 results
search-icon
table-tab-icon
Clear Filters
RRBS
CRISPR genome editing followed by sgRNA sequencing
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 2 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
+ See 4 more…
cell line
EndoC_BH1
1
See all biosamples
Download