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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1587
ChIP-seq
1503
total RNA-seq
519
ATAC-seq
366
single cell RNA-seq
144
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
55
pCHi-C
27
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
366
Transcription
Date released
106
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
3
December, 2019
3
June, 2018
3
May, 2023
2
February, 2023
1
November, 2018
1
September, 2018
Available data
208
tsv
134
fastq
103
bam
103
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
366
Homo sapiens
Biosample type
184
primary cell
180
tissue
2
in vitro differentiated cells
1
cell line
Organ
93
heart
81
pancreas
71
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
brain
2
artery
1
liver
1
musculature of body
Project
226
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
103
GRCh38
103
hg19
Lab
215
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
7
audit script error
organ_slims!
brain
limb
BIOSAMPLE
ASSAY
367 results
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single cell RNA-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 12 more…
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cell line
EndoC_BH1
1
See all biosamples
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