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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
496
total RNA-seq
271
ATAC-seq
186
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
31
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
56
DNA accessibility
Date released
27
February, 2021
21
May, 2022
8
January, 2021
1
February, 2023
Available data
27
fastq
21
zippedFastqFolder
Organism
56
Homo sapiens
Biosample type
56
primary cell
tissue
1
cell line
Organ
8
blood
8
bodily fluid
1
epithelium
1
pancreas
Project
48
HPAP
8
T1D
1
AMP
Lab
48
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Audit category:
27
audit script error
biosample_type!
tissue
month_released!
August, 2018
BIOSAMPLE
ASSAY
57 results
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snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
1
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