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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1524
ChIP-seq
1014
total RNA-seq
491
ATAC-seq
369
single cell RNA-seq
210
DNase-seq
86
RNA microarray
69
WGBS
66
snATAC-seq
38
pCHi-C
34
Hi-C
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
66
DNA accessibility
Date released
27
February, 2021
22
May, 2022
10
April, 2020
6
August, 2021
1
August, 2022
1
February, 2023
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
65
Homo sapiens
Biosample type
48
primary cell
18
tissue
1
cell line
Organ
10
lung
6
kidney
2
pancreas
1
epithelium
1
musculature of body
Project
48
HPAP
10
LungMap
9
AMP
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
3
AMP-T2D consortium
Audit category:
29
audit script error
lab.title!
Kyle Gaulton, UCSD
month_released!
May, 2019
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
67 results
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snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
Langerhans cell
48
tissue
lung
10
kidney
6
islet of Langerhans
1
skeletal muscle tissue
1
cell line
EndoC_BH1
1
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