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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
188
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
153
Transcription
Date released
47
September, 2023
40
September, 2020
33
May, 2022
12
February, 2021
10
August, 2021
9
April, 2020
3
May, 2023
1
March, 2023
Available data
52
zippedFastqFolder
34
fastq
8
txt
2
bed bed3+
Organism
154
Homo sapiens
Biosample type
85
primary cell
67
tissue
2
in vitro differentiated cells
1
stem cell
Organ
58
kidney
9
lung
2
connective tissue
Project
85
HPAP
47
KPMP
13
AMP
9
LungMap
1
community
Genome assembly (visualization)
2
hg19
Lab
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
2
Struan F.A. Grant, CHOP
1
Anna Gloyn, Oxford
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
155 results
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single cell RNA-seq
Capture-C
CRISPRi RNA-seq
primary cell
Langerhans cell
85
tissue
kidney
58
lung
9
in vitro differentiated cells
adipocyte
1
osteoblast
1
stem cell
SB Ad3.1
1
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