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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
total RNA-seq
187
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
25
ChIP-seq
17
pCHi-C
10
MeRIP-seq
5
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
25
DNA binding
1
Transcription
Target of assay
169
histone
histone modification
94
broad histone mark
75
narrow histone mark
17
transcription factor
10
RNA binding protein
8
control
Date released
20
May, 2021
5
May, 2024
1
March, 2023
Available data
8
bigWig
5
bed narrowPeak
Organism
25
Homo sapiens
Biosample type
17
in vitro differentiated cells
5
tissue
3
primary cell
1
stem cell
Organ
5
heart
Project
25
AMP
1
community
Genome assembly (visualization)
5
GRCh38
3
hg19
Lab
AMP-T2D consortium
20
Kyle Gaulton, UCSD
Bing Ren, UCSD
5
Patrick T. Ellinor, Broad
1
Anna Gloyn, Oxford
lab.title!
AMP-T2D consortium
Bing Ren, UCSD
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
CRISPRi RNA-seq
in vitro differentiated cells
embryonic stem cell
17
tissue
left cardiac atrium
5
primary cell
CD8-positive, alpha-beta T cell
3
stem cell
SB Ad3.1
1
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