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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1733
ChIP-seq
1460
total RNA-seq
484
ATAC-seq
362
single cell RNA-seq
170
DNase-seq
87
RNA microarray
83
snATAC-seq
72
WGBS
55
pCHi-C
23
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
Transcription
4
DNA accessibility
Date released
18
July, 2019
1
August, 2017
1
March, 2023
1
November, 2018
Available data
20
bam
20
bigWig
16
tsv
4
bed narrowPeak
4
bigBed narrowPeak
2
fastq
Organism
20
Homo sapiens
Biosample type
19
tissue
1
primary cell
1
stem cell
Organ
5
brain
4
pancreas
3
adipose tissue
3
connective tissue
3
liver
2
kidney
musculature of body
blood vessel
1
epithelium
1
heart
1
vasculature
1
vein
Project
20
AMP
1
community
Genome assembly (visualization)
20
hg19
16
GRCh38
Lab
20
AMP-T2D consortium
1
Anna Gloyn, Oxford
organ_slims!
blood vessel
musculature of body
BIOSAMPLE
ASSAY
21 results
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small RNA-seq
FAIRE-seq
CRISPRi RNA-seq
tissue
body of pancreas
2
frontal cortex
1
1
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
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primary cell
mesenchymal stem cell of adipose
1
stem cell
SB Ad3.1
1
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