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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1
DNA sequencing
1
Transcription
Date released
6
August, 2021
5
January, 2018
1
March, 2023
Available data
5
bigWig
5
fastq
1
vcf
Organism
11
Homo sapiens
Biosample type
6
cell line
4
in vitro differentiated cells
2
stem cell
Organ
3
liver
2
kidney
1
embryo
Project
11
AMP
1
community
Genome assembly (visualization)
5
hg18
Lab
6
Bing Ren, UCSD
5
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
1
inconsistent ontology term
assay_title!
snATAC-seq
snDrop-seq
BIOSAMPLE
ASSAY
12 results
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GRO-seq
STARR-seq
CRISPRi RNA-seq
whole genome sequencing assay
cell line
HepG2
2
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
SB Ad3.1
1
hESC
1
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