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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
705
ChIP-seq
663
total RNA-seq
48
ATAC-seq
14
DNase-seq
11
WGBS
8
pCHi-C
6
small RNA-seq
5
Hi-C
5
single cell RNA-seq
3
RRBS
2
Capture-C
2
STARR-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
705
DNA binding
3
DNA methylation
Target of assay
378
transcription factor
181
histone modification
180
histone
143
control
93
narrow histone mark
86
broad histone mark
82
recombinant protein
68
RNA binding protein
25
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
166
August, 2017
63
December, 2017
50
May, 2020
49
November, 2018
24
August, 2021
23
October, 2018
12
June, 2019
6
October, 2019
2
July, 2019
Available data
612
bam
543
fastq
507
bigWig
471
bed narrowPeak
367
bigBed narrowPeak
108
tagAlign
59
bed broadPeak
58
bigBed broadPeak
19
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
Organism
710
Homo sapiens
Biosample type
378
cell line
230
tissue
84
in vitro differentiated cells
18
primary cell
Organ
554
liver
222
pancreas
220
brain
156
connective tissue
137
epithelium
136
heart
103
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
56
kidney
44
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
6
eye
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
Project
710
AMP
Genome assembly (visualization)
510
hg19
435
GRCh38
Lab
690
AMP-T2D consortium
18
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
27
inconsistent control
12
inconsistent ontology term
Audit category:
30
missing controlled_by
Audit category:
33
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
710 results
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ChIP-seq
RRBS
Capture-C
cell line
HepG2
378
tissue
liver
145
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
+ See 3 more…
in vitro differentiated cells
adipocyte
67
1
hepatocyte
15
osteoblast
1
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
1
hepatocyte
4
1
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